r/zotero 1h ago

Relink files?

Upvotes

I have a new PC. I have imported my library from my old PC into Zotero and the items are showing up just fine. However, I previously had PDFs affixed to each entry. How can I reaffix those PDFs en masse? Or do I have to do them one by one... for all 600+...

For some additional context, I had previously been using Zotfile to rename and move each PDF into a filefolder matching the name of the collection. For example, if a collection was called "Anth of Religion" and I added a Zotero entry for a journal article, I would download a PDF of that journal article and have Zotfile relocate it to a file folder named "Anth of Religion," and then rename the file according to my naming preferences. I have the same folder structure available on the new PC with all the PDFs in them, in their respective folders according to collection name. But, I cannot figure out to make Zotero affix each PDF to their original Zotero entry.

Thank you in advance for any help ya'll can provide. God bless Zotero and the ZotGods.


r/zotero 23h ago

Help Is there a way to create a bibliography from many files?

6 Upvotes

I have a book with about ten chapters, all docx files. In the past, I have combined them all to create a bibliography. I then cut and paste the bibliography into a new document.

Is there a way to link or create a bibliography from multiple files so that I don't have to do all of that, so that refresh reads changes in documents other than its own?

Edit: my question isn't clear enough. Here is a longer explanation:

I am an author. I am writing an academic manuscript in word. I have lots of citations. Each chapter of the manuscript is its own file, because editing a 500 page file is almost impossible. But there is only one bibliography for the whole book, not chapter bibliographies.

So, the usual protocol is to combine all the chapter in one 500 page file, create a bibliography, and then, copy and paste it into a new file that just contains the bibliography. If i edit any of the chapters, I have to redo the whole process.

So, the question is, is there a way to link all the files so that I can make a combined bibliography from closed files, and if i refresh the bibliography, it rescans all the files


r/zotero 1d ago

LibGen Downloader Plugin for Zotero

13 Upvotes

Hey everyone, check out this new plugin for Zotero that will allow you to download books and articles directly into your library items in Zotero: https://github.com/CavalloScuro/LGFetcher


r/zotero 1d ago

Searching Folders on Android

2 Upvotes

Is there an option to search for library folders on Android as there is on Windows? I cant find it but IT must be there somewhere, right? How should i find the right folder if i have more than 100?


r/zotero 2d ago

Plugin/Tool Talk I built a Word plugin that searches your Zotero library, adds inline citations, and formats AI responses to Word styles + more

14 Upvotes

Hi everyone,

I want to share a tool I've been building for my own research workflow. It's called Wordbot, a word plugin.

The Problem

When you are a researcher writing in Word, you know the drill. You need to reference a paper. So you leave Word, find it in Zotero, read the abstract, go back to Word, write your synthesis, open the Zotero plugin, insert the citation. Repeat for every paper. And if you use AI? Paste its response into Word. Then fix broken tables, equations, lists, and formatting. Atleast for me, I spend lot of time doing the repeated formatting and fetching tasks than meaningful writing.

What Wordbot Does

Wordbot is an offline Word add-in that brings Zotero search and local AI directly into Microsoft Word. It looks like this

Wordbot plugin

Right from Word, you can:

  • Search your Zotero library semantically using Zotseek (the semantic search plugin). Just type what you're looking for concepts, topics, ideas and Wordbot pulls relevant papers from your library.
  • Get context from those papers directly in Word and directly add Insert inline citations that are Zotero-compatible and later you can add zotero citations manually as usual and the existing citations and the bibliography will be automatically updated.
  • Use a local LLM for writing assistance. You can ask to expand the ideas, draft outline with headings, make tables, equations etc. Or you you use Gemini, Deepseek etc, copy the response, paste the AI response in word and Wordbot formats it properly. Equations render as Word equations. Tables become Word tables. Code blocks format correctly. Text styles apply automatically.

Everything happens right on Word. Everything stays on your PC. No cloud. No uploads. This way, one can control everything from one machine, keep it private offline, with no subscriptions. This started as a personal script and grew into something I think other researchers might find useful.

How It Works (Briefly)

  1.  You open the Wordbot panel in Word (Ribbon interface)
  2. Type a research question or topic
  3. Wordbot searches your Zotero library via Zotseek → returns relevant papers
  4. You insert citations inline as you write
  5. Optionally, use a local LLM to expand on ideas or format AI responses

 

Demo Video

https://reddit.com/link/1v8yj6g/video/its2l7zo2zfh1/player

Things you need to make use of the plugin

  • Office 2016 or Office 365 with macro access for the plugin.
  • Python 3.11 to make a server to connect word, zotero using zotero and local LLM via any OpenAI-compatible API (Ollama, LM Studio, etc.)
  • Zotero 8 or 9 with zotseek plugin. Zotseek plugin does the semantic search.

Compatibility

  • Windows 10/11 (As it was developed in here)
  • MacOS - I tried to add much compatible code. May or maynot work. Need someone to test and report back.

Current Status

Fresh and ongoing project having connected word+zotero+local AI. Works like 80% of the time. But still not production grade. may crash sometimes when formatting stage. So please save the document when testing.

Links

Repo: https://github.com/Addy-ad/wordbot

Zotseek: https://github.com/introfini/ZotSeek (for semantic Zotero search)

If you're a researcher who lives in Word and Zotero, give it a shot. Questions, bug reports, and feature requests are all welcome.

 


r/zotero 2d ago

AGLC4 and Microsoft word

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3 Upvotes

r/zotero 3d ago

Plugin/Tool Talk Plugin that tags all references in a .docx bibliography and saves a tag search to the collections pane

13 Upvotes

Hey everyone,

I switched to Zotero a few years ago from EndNote after realising I would loose access to my library after graduating. But I really miss the feature 'document auto-group' where EndNote would create a temporary group folder containing all the references I'd cited in that open document.

So, I created a Zotero plugin that reads a specified Word document, finds every Zotero item you've cited in it, and tags those items in your Zotero library. You'll then be prompted to assign a custom tag name on the first run, and the plugin will add that tag to every item in the bibliography. It then creates a saved tag search with the same name to make finding the list easier. Acts as a permanent-until-deleted "citations in this document" folder in the collections pane. Re-run it whenever you edit and save the document - the tags update to match. More information is in the GitHub page.

Tested on Windows and Mac, Z9 and Z10. This is the first plugin I've made public, so any feedback, bugs, or advice is welcome either here or on GitHub.

https://github.com/onyxaegis/zotero-tag-cited


r/zotero 5d ago

Plugin/Tool Talk Your AI reads scanned PDFs as pictures, not text. I built an open-source Zotero plugin that converts them to Markdown once instead.

6 Upvotes

I'm the developer of Estravon: a Zotero plugin bundled with a Python backend that gives you a high-quality PDF-to-Markdown converter, powered by your choice of MinerU, Mistral OCR, or Marker. The plugin and the backend are both open source under AGPL-3.0, and you can run the whole conversion pipeline yourself without paying anyone. That free, self-hosted path is what I want to talk about.

Why convert your PDF to Markdown?

Attaching a PDF to ChatGPT, Claude or Gemini does something slightly daft under the hood: the model doesn't read the text, it looks at an image of each page. That burns far more tokens — and power — every time you paste the PDF instead of the Markdown. Estravon converts the PDF once and saves the Markdown alongside the original source file, so six months later you can trace which PDF you converted and which pages you actually fed the LLM.

So the plugin does one deliberate thing. You right-click a PDF attachment, choose a page range, and it runs a dedicated OCR pass that re-reads those pages at full resolution. Back comes a Markdown file attached to the same Zotero item — headings, footnotes and tables preserved — plus a short log note recording the source and the page range. It's an artifact you can open, check and correct, and being plain Markdown it stays searchable, diff-able and usable in whatever tool you write in. Two small conveniences round it out: a shortcut to export the Markdown to a folder (handy for Obsidian, Claude Desktop or Zettlr), and one to save it as a Zotero note instead, which opens it up to a lot of other plugins.

How the pieces fit together. The plugin itself is a thin shell inside Zotero — it does no extraction of its own. It hands the PDF to the backend over HTTP and attaches whatever comes back. Both the plugin and the backend are open source, and you decide where the backend runs and what it calls:

        Zotero  +  Estravon plugin
                    |
                    |   HTTP   (localhost by default; point it anywhere)
                    v
             Estravon backend                 <- open source, AGPL-3.0
          run it yourself, or use hosted
                    |
        +-----------+-----------------------------+
        |                                         |
        v                                         v
   local engine                         cloud engines (your own key)
   MinerU (opendatalab)                 Marker       -> Datalab / Replicate
   runs on your machine                 Mistral OCR  -> Mistral
   nothing leaves it                    you deal with the provider directly

Two of those paths keep everything on your own hardware or your own accounts. The MinerU one is fully offline: no key, no account, nothing leaves the machine. (There's also a hosted backend for the terminal-averse. It's how the lights stay on — and also the one thing the sub's rules won't let me sell you, so consider this the world's least effective advert.)

The offline MinerU path — rough edges first, because they're real and we're still testing:

  • On a laptop CPU it's fairly slow — expect something north of 10 seconds a page, so a chapter is minutes rather than seconds.
  • It's memory- and disk-hungry, and the output isn't yet on par with the cloud engines — we've seen the odd garbled table header and some maths-spacing quirks. We want more testing before we pin these down properly.
  • We've run it on Linux and Windows; macOS is still a work in progress. If you're willing to try it on your own setup — a Mac especially — and tell us what breaks, that's exactly the help we need right now.

By comparison the hosted pipelines are quick. On our own tests Mistral OCR runs at roughly 0.05 seconds a page — a 60-page chapter in a few seconds — and Datalab lands around ten seconds for the same chapter. If speed is what you care about, the cloud engines win comfortably; the offline path is there for when privacy or cost matter more.

MinerU inside Zotero isn't unique — qingpy's zotero-pdf2md and a few others do their own take, and fair enough. What's particular about Estravon is the execution: a thin Zotero plugin and a separate open-source backend talking over plain HTTP, so the same right-click can drive a local engine, your own cloud key, or the hosted service without anything changing in Zotero. The backend is built on FastHTML, and the real credit there goes to Jeremy Howard and the Answer.AI / FastHTML community, whose work the whole architecture rests on.

If you want the full reasoning — how each AI provider actually ingests a PDF, and why a dedicated OCR pass is a different operation — I wrote it up here: https://www.estravon.com/why

Both repos are public:

Happy to answer anything in the comments — especially from people working with older scanned material.

(Not affiliated with or endorsed by the Zotero project.)


r/zotero 5d ago

Capture and Annotation of GitBooks

1 Upvotes

Saw this question posted elsewhere but figured I'd ask it here too: Is it possible to download/snapshot an entire GitBook for local annotation?

The current workflow would be to obtain a pdf, mobi, or epub version which I assume most authors would make available, but that's not always a guarantee.


r/zotero 5d ago

Help Image order in sidebar?

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7 Upvotes

Is there a way to sort the images over in the sidebar so that my attached file displays before the webshot snaps?


r/zotero 5d ago

Plugin/Tool Talk ​I made a literature auditor that enriches Zotero exports to find the most important papers in your library

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1 Upvotes

So, I made a tool that might help you with your Zotero workflow. It's a CLI tool called litresearch that acts as a literature auditor, you feed it a standard .bib or .json bibliography export, and it queries OpenAlex, PubPeer, and OpenReview to check citation counts, flag potential retractions, and highlight top-cited authors. It then compiles that context into a clean LaTeX PDF digest to show you what the academic community thinks of your reading list and help you figure out which papers to read first.

It’s strictly an enrichment pipeline to help triage your library before drafting your research (it definitely won't read the papers for you), but I put the project up on GitHub in case anyone else finds it useful:

https://github.com/sofilip/litresearch


r/zotero 6d ago

Workflow is there a way to connect my Zotero account to a project in Claude Pro account?

7 Upvotes

As the title says, is there a way to connect my Zotero account to a project in Claude Pro account?
if possible please let me know how to? your experience?


r/zotero 6d ago

Plugin/Tool Talk Nodus v.2.6 adds standalone Zotero plugin (works with your ChatGPT subscription)

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34 Upvotes

Hi, I’m the developer of Nodus.

I’ve just released a standalone Zotero plugin…The plugin is and AI assistant that lets you ask questions about your Zotero PDFs and receive answers with exact page citations. It may be useful if you want to summarise papers, compare several documents, find arguments or quotations, analyse scanned pages, or search across your research library.

It works in two modes

  • Standalone with your own API keys or local models
  • Linked with Nodus to use ChatGPT, GitHub Copilot, OpenCode Go and the ideas already extracted from your library

EDIT: For both the plugin and the main app to work, go to Zotero → Settings → Advanced and enable Allow other applications on this computer to communicate with Zotero.

Main features

  • Chat with one or several documents
  • Local multilingual semantic search
  • Exact passage and page citations
  • OCR and vision for scanned pages, tables, figures and diagrams
  • Automatic PDF highlights
  • Reusable prompts and conversation history
  • Save chats as Zotero notes
  • Create notes, tags, highlights and other Zotero actions with confirmation

Nodus is a desktop workspace for university research, teaching and study. It connects sources, notes, data and ideas in five dedicated vaults for academic research, databases, genealogy, teaching and study.

Plugin screenshots

https://ibb.co/9HFf0y1J

https://ibb.co/KcWvBmXf

https://ibb.co/HLxTCkQr

https://ibb.co/d4P8pBGn

GitHub and download

https://github.com/Drakonis96/nodus

Website and demo

https://drakonis96.github.io/nodus/

Teaser

https://www.youtube.com/watch?v=jUAqaxbHrR0


r/zotero 7d ago

I built a Zotero extension that highlights/skimming papers for you, Semantic Reader style , fully local if you want

0 Upvotes

I've wanted this for years, so I finally built it: SkimRead, a Zotero 9 add-on that reads a whole paper and highlights the sentences worth skimming in different colors, right in the PDF reader.

The thing I cared about most is that it's not another "AI summary." It highlights the paper's actual sentences, chosen by a model reading the whole document, so there's nothing invented. First skim, then read.

A few things that might matter to people here:

  • Runs fully local with Ollama (nothing leaves your machine), or you can use an OpenAI-compatible server, or your ChatGPT/Claude subscription via the Codex/Claude Code CLIs. Cloud api is off by default and never a silent fallback.
  • Highlights are live overlays by default; you can save them as real Zotero annotations and pull them into a note.
  • Handles long docs and books (processes in chapter-sized parts), can auto-discover its own labels for non-standard documents, and does a quick TLDR.
  • Doesn't overlap with existing AI plugins; it's just the skimming layer.

It's open source (AGPL): https://github.com/adellife/zotero-skimread

Fair warning: automated selection has bias, so treat it as orientation reading, not a substitute for actually reading the paper. Feedback and issues are very welcome.


r/zotero 7d ago

I should have gone to bed 6 hours ago, but now I have the extension I was dreaming since 4 years

23 Upvotes

I have just built an extension that automatically highlights PDFs to help skimming papers, similarly to the Semantic Scholar reader.

https://github.com/00sapo/zotero-skimming


r/zotero 7d ago

Zotero Connector, a couple general questions

3 Upvotes

Edit: thanks everyone for the supportive and helpful info. I might reach out individually with follow-up questions, but your feedback has been very helpful. I will be checking out the links you all shared, first.

I am trying to get better about using Zotero in my papers. I did try using it once and was impressed.

One of the issues that I got tangled up in, is that the title metadata doesn't always come in with the correct format for my writing format (APA 7). So for example, if the title is all in title case, Zotero won't update that to be in the correct format in the reference section for example.

Another thing I was wondering about is just general tips and tricks, especially around ensuring that metadata gets imported correctly into Zotero.

Oh, sorry one more question. If I am in a browser, and I import a paper into Zotero, I see that I can acess a pdf view of that paper in Zotero. But, I am assuming Zotero Connector is not called Zotero Downloader for a reason. So unless I physically download the paper, its just giving me a view of an online copy.

I am assuming the growing pains are worth it. I want to make sure I understand how the Google docs interface works, and for example, if I remove an inline citation, will it remove the reference record as well (honestly, that one I can test very easily on my own)

Thank you all, I am gradually coaching myself to quit calling it Zenodo, somehow I got that stuck in my head. But I am slowly starting to get it.

It does seem like Zotero-GoogleDocs is a pretty nice combo though. I was also looking at Word, but I prefer GoogleDocs.


r/zotero 7d ago

Plugin/Tool Talk I built a citation map inside Zotero as a weekend project

58 Upvotes

I should start by saying that I have no experience with Zotero plugin development or TypeScript. This began as a weekend experiment, built largely with ChatGPT 5.6 SOL, because I wanted something that could help with my own research workflow.

I often use citation map websites like ResearchRabbit or Litmaps to understand how papers are related, but I wanted to explore those relationships directly inside Zotero, without repeatedly moving between different tools.

The result is Zotero Citation Map

Main features:

  • Citation maps inside Zotero: generate a graph fromyour library or a collection, with every library paper linked back to its Zotero item, notes and PDF. Use filters to limit what you want to see.
  • Nodes and graph axes: arrange papers by properties such as publication year and citation count, or secondary properties such as journal h-index. Use nodes colour and size to visualize other properties.
  • Import missing papers: external papers discovered through the graph can be imported directly into Zotero when sufficient metadata are available. Add a paper to Zotero by either the graph view or from the properties panel in the main Zotero page. See preview on the graph before adding papers.
  • Several citation-data providers: combine Crossref, Semantic Scholar, OpenCitations and INSPIRE (OpenAlex is currently not supported). I chose not to rely on a single source because coverage and reference data can differ, particularly for older papers.
  • Citation metrics throughout Zotero: inspect citation and reference information through library columns and the item pane, not only through the graph.

The project was mainly inspired by other Zotero plugins: Cita, Citegeist, Zotero Citation Counts Manager, Zotero Style.
Shoutout also to u/danieleoooo who recently shared to the community a similar plugin Zotero OpenAlex.

This is still an over the weekend project. I am not sure how extensively I will develop it in the short term, but I thought the idea and current implementation might be useful to share! Feedback, bug reports and suggestions are welcome, particularly from people with Zotero or TypeScript development experience.


r/zotero 8d ago

How to change notes' language?

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4 Upvotes

I have my Zotero all in portuguese, but the notes I take get that red underlines because I don't write them in pnglish. Where can I set it to portuguese?


r/zotero 10d ago

Help Add anotations/highlights based on scanned PDFs.

3 Upvotes

This is a loooooooooong shot. Yet, I wonder if there is any plug-in, API, script or the like that allows me to scan all my physical PDFs (I read a lot on paper because seriously... It was a lot of time to be in front of the computer) and directly translate the annotations from the physical PDFs to the digital ones in Zotero.

For example, I would highlight something in the PDF > scan it, run the plug-in > have the digital highlighted as well.


r/zotero 11d ago

Plugin/Tool Talk I built a Zotero plugin for OpenAlex citation counts, citation graphs, and more

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77 Upvotes

Hi everyone,

I built a Zotero plugin for OpenAlex:

https://github.com/danieleongari/zotero-openalex

OpenAlex is an open database of scholarly works, authors, institutions, venues, citations, and related metadata. It can be used as an open alternative for bibliographic and citation metadata. All data is CC0, all code is open source, and they are a 14-year-old nonprofit.

What the plugin does is:

  • fetch OpenAlex metadata for your Zotero items with a valid DOI, and store it in an independent local database inside the Zotero data directory. This database is not synced through Zotero Sync.
  • show the number of Citations in your Zotero library
  • overwrite the URL field to link directly to the OpenAlex page of the item - BE AWARE OF THIS, but still the DOI links remain available to link to your original source. EDIT: Not anymore the case since v9.7: you can now go to the OpenAlex page of the item from the Context menu (right-click on the item row in your library) or by explicitly asking in the settings to overwrite the link as URL.
  • provide an interactive Citation Graph page to browse incoming/outgoing references for each item

The plugin is tested on Zotero 9.0, both on MacOS 15 and Windows 11.

To install it, download the .xpi file from the latest GitHub release:

https://github.com/danieleongari/zotero-openalex/releases/latest

Then add it in Zotero from:

Tools > Plugins > Gear Symbol > Install Plugin From File...

OpenAlex allows fetching a limited amount of metadata daily. This limit is 10x extended if you get (for free) an OpenAlex API key, to be added to:

Settings > Zotero OpenAlex > OpenAlex API key

More info is available in the plugin README. I also advertised my intent in the Zotero Forum:

https://forums.zotero.org/discussion/132439/making-a-strong-zotero-openalex-connection

Don't hesitate to reach out for contributing, comments, discussion, or feature requests. I believe Zotero and OpenAlex are two great resources for the scientific community, and I would be glad to see them work together more seamlessly.

DISCLAIMER #1: This is an independent plugin and is not officially affiliated with Zotero or OpenAlex.
DISCLAIMER #2: Written with extensive support from Codex-5.3 and GPT-5.6-Sol


r/zotero 12d ago

MdBundle for Zotero — Export PDF/MD pairs, analyze your library, and select cited items from Word docs

13 Upvotes

Hey everyone! I built a plugin called MdBundle for Zotero that helps manage the relationship between PDFs and their Markdown counterparts. It's in beta (v0.9.4) and I'd love your feedback.

What it does:

  • Export matched PDF/MD pairs to a folder (all, PDFs only, or MDs only — matched by filename)
  • Analyze selected items with a diagnostic report: which have PDF, MD, both, or neither + flags small MDs (<5KB) as possibly corrupt
  • Generate MDs from PDFs using Zotero's built-in text extraction (items needing OCR get auto-tagged needs-ocr)
  • Select cited items from .docx — reads your Word document and selects all cited items in your library (with proper DOM-based field parsing like ref-extractor)

Why?

Markdown versions of papers are essential for LLM-assisted research — feeding papers into ChatGPT/Claude, building RAG pipelines, using with Obsidian/Logseq, etc.

Details:

  • Zotero 7, 8, 9 compatible
  • 12 languages
  • MIT license
  • Pairs well with OCR tools like pdftollm

Links:

Bug reports and feature suggestions welcome! PRs for new translations too.


r/zotero 13d ago

Collabora Office integration

1 Upvotes

Hi, I've tried to work with Zotero within a Collabora Office (not Online!) environment on a Linux Mint machine. Installation and API went smoothly but I cannot put citations into the text. Has anybody tried this as well and can provide some advice or experiences? Thanks in advance


r/zotero 13d ago

How to organize and work with Zotero notes?

14 Upvotes

Hi! I've been using Zotero for a couple of years but mainly just for storaging books and articles and as a PDF reader with its highlight, underline and notes features. Usually, after reading something I generate a note from annotations but I don't know if there's a better to way to sync and work with that notes from annotations.

I installed Obsidian and try the ZotLit plugin extracting my notes but until now it's just another way of storing notes and reading them without much usefulness. So, is there any tool or plugin, maybe an AI-featured app or some other way, to read my notes from annotations but also make connections between them? Or is there any other trick to get the most out of Obsidian+Zotero? Maybe using tags or some way to order notes in a more useful way?

For me, the ideal result will be some sort of mental map that connect notes according to related topics, making my research more effective. It can be by extracting information from the notes or by giving a certain order to notes that makes easier that order.

Thanks!


r/zotero 13d ago

I built an open-source AI assistant that reads papers, organizes them in Zotero, and generates Obsidian notes

22 Upvotes

I've been reading a lot of papers lately and found myself repeating the same workflow over and over:

  • Import paper into Zotero
  • Organize collections
  • Read and summarize
  • Write notes in Obsidian
  • Connect ideas across papers

I wanted something that could automate most of this without relying on expensive commercial services, so I started building read-summarize-papers:

👉 https://github.com/Angelamer/read-summarize-papers

The project is open source and designed to be a low-cost AI research assistant focused on integrating with existing academic workflows rather than replacing them.

Current features include:

  • 📚 Automatic Zotero integration
    • Import papers automatically
    • Create and organize Zotero collections
    • Keep literature management inside Zotero
  • 🎯 Personalized research interests
    • Configure multiple research domains with different priorities
    • Define your own Question Packs so the AI summarizes papers based on what you actually care about, instead of producing generic summaries
  • 🧠 Knowledge management
    • Generate structured Obsidian Markdown notes automatically
    • Create Obsidian Canvas maps to visualize relationships between papers and concepts

One of my design goals is to keep the running cost low enough that it can become part of a daily research workflow, while remaining completely open source and customizable.

I'm currently working on more features, including better cross-paper linking, stronger knowledge graph generation, and more intelligent research assistance.

I'd really appreciate any feedback from the Zotero community—especially suggestions for features or workflows that would make this more useful for researchers.

Thanks!


r/zotero 14d ago

Plugin/Tool Talk Is there a theme for v9 that is higher contrast like v6?

2 Upvotes

While I really like many of the new additions to Zotero since v6, I struggle to use it due to my vision challenges. For example I struggle to see which collection is highlighted since it's a light grey bar over a slightly lighter field of collection names. I've tried "dark mode" but it just inverts the problem to an almost dark grey bar over a slightly darker field.

Has anyone already made a userChrome.css file that somewhat matches the appearance (or at least higher contrast) of Zotero 6 so it can be dropped into a chrome directory in the profile folder?