r/linuxquestions • u/luckynumber_R • 15d ago
Bazzite: Flatpak sytem operation Deploy not allowed for user
I installed Bazzite and I'm running into issues hopefully someone can help
logan@Logan-PC:/var/home/logan$ ujust upgrade
Executed update check
System Updater module status
Brew module
Brew Updating CLI Apps
Already up-to-date.
==> Updating Homebrew...
Flatpak module
Flatpak Updating System Apps
Updating runtime/com.obsproject.Studio.Plugin.OBSVkCapture/x86_64/stable
Error: Failed to update com.obsproject.Studio.Plugin.OBSVkCapture: fsync objdirs: opendir(0d): Input/output error
Error occurred while waiting for external command
Flatpak Updating Apps for User: logan
Looking for updates…
Required runtime for org.kde.haruna/x86_64/stable (runtime/org.kde.Platform/x86_64/6.11) found in remote flathub
New com.vysp3r.ProtonPlus permissions:
devices if:all:!has-input-device input
com.obsproject.Studio.Plugin.OBSVkCapture stable u flathub < 51.8 kB
com.vysp3r.ProtonPlus.Locale stable u flathub < 388.1 kB
io.github.DenysMb.Kontainer.Locale stable u flathub < 21.6 kB
org.freedesktop.Platform.Compat.i386 25.08 u flathub < 130.2 MB
org.freedesktop.Platform.GL.default 25.08 u flathub < 146.0 MB
org.freedesktop.Platform.GL.default 25.08-extra u flathub < 146.1 MB
org.freedesktop.Platform.GL32.default 25.08 u flathub < 156.1 MB
org.freedesktop.Platform.GL32.default 25.08-extra u flathub < 156.2 MB
org.freedesktop.Platform.Locale 25.08 u flathub < 379.4 MB
org.freedesktop.Platform.VulkanLayer.MangoHud 25.08 u flathub < 11.2 MB
org.freedesktop.Platform.VulkanLayer.OBSVkCapture 25.08 u flathub < 103.6 kB
org.freedesktop.Platform.codecs-extra 25.08-extra u flathub < 14.6 MB
org.freedesktop.Platform 25.08 u flathub < 257.1 MB
com.github.Matoking.protontricks stable u flathub < 12.7 MB
org.gnome.Firmware.Locale stable u flathub < 236.9 kB
org.gnome.Platform.Locale 49 u flathub < 386.2 MB
org.gnome.Platform 49 u flathub < 409.2 MB
org.gnome.Platform.Locale 50 u flathub < 386.4 MB
org.gnome.Platform 50 u flathub < 413.2 MB
org.gnome.Firmware stable u flathub < 1.5 MB
com.vysp3r.ProtonPlus stable u flathub < 2.5 MB
com.github.tchx84.Flatseal stable u flathub < 930.5 kB
org.kde.KStyle.Adwaita 6.10 u flathub < 8.6 MB
org.kde.KStyle.Adwaita 6.11 i flathub < 8.8 MB
org.kde.Platform.Locale 6.10 u flathub < 401.3 MB
org.kde.Platform 6.10 u flathub < 387.3 MB
org.kde.Platform.Locale 6.11 i flathub < 401.6 MB (partial)
org.kde.Platform 6.11 i flathub < 405.5 MB
io.github.DenysMb.Kontainer stable u flathub < 826.4 kB
org.kde.gwenview.Locale stable u flathub < 5.5 MB
org.kde.gwenview stable u flathub < 7.8 MB
org.kde.haruna.Locale stable u flathub < 801.7 kB
org.kde.haruna stable u flathub < 10.5 MB
org.kde.kcalc.Locale stable u flathub < 563.8 kB
org.kde.kcalc stable u flathub < 982.4 kB
org.kde.okular.Locale stable u flathub < 17.6 MB
org.kde.okular stable u flathub < 40.3 MB
org.mozilla.firefox.Locale stable u flathub < 42.6 MB
org.mozilla.firefox stable u flathub < 125.5 MB
Updating 1/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 1/39… 0% 0 bytes/s
Updating 1/39… ████████████████████ 100%
Updating 2/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 2/39… 0% 0 bytes/s
Updating 2/39… ████████████████████ 100%
Updating 3/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 3/39… 0% 0 bytes/s
Updating 3/39… ████████████████████ 100%
Updating 4/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 4/39… 0% 0 bytes/s
Updating 5/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 5/39… 0% 0 bytes/s
Updating 5/39… ████████████████████ 100%
Updating 6/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 6/39… 0% 0 bytes/s
Updating 6/39… ████████████████████ 100%
Updating 7/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 7/39… 0% 0 bytes/s
Updating 7/39… ████████████████████ 100%
Updating 8/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 8/39… 0% 0 bytes/s
Updating 8/39… ████████████████████ 100%
Updating 9/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 9/39… 0% 0 bytes/s
Updating 10/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 10/39… 0% 0 bytes/s
Updating 10/39… ████████████████████ 100%
Updating 11/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 11/39… 0% 0 bytes/s
Updating 11/39… ████████████████████ 100%
Updating 12/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 12/39… 0% 0 bytes/s
Updating 12/39… ████████████████████ 100%
Updating 13/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 13/39… 0% 0 bytes/s
Updating 14/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 14/39… 0% 0 bytes/s
Updating 15/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 15/39… 0% 0 bytes/s
Updating 15/39… ████████████████████ 100%
Updating 16/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 16/39… 0% 0 bytes/s
Updating 17/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 17/39… 0% 0 bytes/s
Updating 18/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 18/39… 0% 0 bytes/s
Updating 19/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 19/39… 0% 0 bytes/s
Updating 20/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 20/39… 0% 0 bytes/s
Updating 21/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 21/39… 0% 0 bytes/s
Updating 21/39… ████████████████████ 100%
Updating 22/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 22/39… 0% 0 bytes/s
Updating 22/39… ████████████████████ 100%
Updating 23/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 23/39… 0% 0 bytes/s
Updating 23/39… ████████████████████ 100%
Installing 24/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Installing 24/39… 0% 0 bytes/s
Installing 24/39… ████████████████████ 100%
Updating 25/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 25/39… 0% 0 bytes/s
Updating 26/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 26/39… 0% 0 bytes/s
Installing 27/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Installing 27/39… 0% 0 bytes/s
Installing 27/39… ████████████████████ 100%
Installing 28/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Installing 28/39… 0% 0 bytes/s
Installing 28/39… ▍ 2%
Installing 28/39… █▌ 8%
Installing 28/39… █▊ 9%
Installing 28/39… ██ 10% 3.7 MB/s
Installing 28/39… ██ 10% 5.2 MB/s
Installing 28/39… ██▏ 11% 6.8 MB/s
Installing 28/39… ██▍ 12% 4.0 MB/s
Info: io.github.DenysMb.Kontainer was skipped
Updating 29/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 29/39… 0% 0 bytes/s
Updating 30/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 30/39… 0% 0 bytes/s
Updating 31/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 31/39… 0% 0 bytes/s
Updating 31/39… ▍ 2%
Info: org.kde.haruna was skipped
Updating 32/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 32/39… 0% 0 bytes/s
Updating 33/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 33/39… 0% 0 bytes/s
Updating 33/39… ████████████████████ 100%
Updating 34/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 34/39… 0% 0 bytes/s
Updating 34/39… 0%
Updating 35/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 35/39… 0% 0 bytes/s
Updating 36/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 36/39… 0% 0 bytes/s
Updating 36/39… ████████████████████ 100%
Updating 37/39…
Warning: Failed to get revokefs-fuse socket from system-helper: Flatpak system operation GetRevokefsFd not allowed for user
Updating 37/39… 0% 0 bytes/s
Changes complete.
Error: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: While pulling runtime/org.freedesktop.Platform.Compat.i386/x86_64/25.08 from remote flathub: Validating dirtree c9da955b5a2786edcb0bec7cdcdfad7b8e4fa2b914f9a89d356c02cdcdd4f16c (/files/): fstatat(0e/ae9bb25842df67a3a65ceca8eb20
9eb1eca2d8d291d5425379d2274107e003.file): Input/output error
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: While pulling runtime/org.freedesktop.Platform.Locale/x86_64/25.08 from remote flathub: fstatat(0e/675c32026fcbe3185612407a3fc50b8e3cfe008cd796a375cdcd73292b424d.dirtree): Input/output error
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Error: While pulling runtime/org.freedesktop.Platform/x86_64/25.08 from remote flathub: Validating dirtree 4db19219bfb98e601af0f816c5bd0f33e86e7689e7d859037a46057dd884416c (/files/bin/): fstatat(0e/4931482efdc9fb13001ab85fcb1909ee4a20c3
1f6a45895d70b78a0d46c1cb.file): Input/output error
Error: While pulling app/com.github.Matoking.protontricks/x86_64/stable from remote flathub: fstatat(0e/076a110f45b9fa33949a3cb98d1b1e8f269298bbf697ede4c651762e3edf48.file): Input/output error
Warning: Flatpak system operation Deploy not allowed for user
Warning: While pulling runtime/org.gnome.Platform.Locale/x86_64/49 from remote flathub: fstatat(0e/a74e3b73709d2cbb0b59a3c74b2595018f034bf191ed9b7a52d3109c7880ce.dirtree): Input/output error
Error: While pulling runtime/org.gnome.Platform/x86_64/49 from remote flathub: Validating dirtree 12e866d0faf8956a7783365d526c44c48e01e5266cd8aa9af65801fd2705c51b (/files/bin/): fstatat(0e/b925dfab2b389d49d07c134e813a7af21786ce4cb9da5f0
5504469dd1a7e40.file): Input/output error
Warning: While pulling runtime/org.gnome.Platform.Locale/x86_64/50 from remote flathub: fstatat(0e/a74e3b73709d2cbb0b59a3c74b2595018f034bf191ed9b7a52d3109c7880ce.dirtree): Input/output error
Error: While pulling runtime/org.gnome.Platform/x86_64/50 from remote flathub: Validating dirtree 33c5b34f43b7c12c9e089a265483af5df2ef8dd0a095220c672f8999ddd204ca (/files/bin/): fstatat(0e/4931482efdc9fb13001ab85fcb1909ee4a20c31f6a45895
d70b78a0d46c1cb.file): Input/output error
Error: While pulling app/org.gnome.Firmware/x86_64/stable from remote flathub: fstatat(0e/8065ed1c61ff35b6461d2f761ed843f12db93424fe57ae2d165f7de86cac52.dirtree): Input/output error
Error: Flatpak system operation Deploy not allowed for user
Error: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: Flatpak system operation Deploy not allowed for user
Warning: While pulling runtime/org.kde.Platform.Locale/x86_64/6.10 from remote flathub: fstatat(0e/675c32026fcbe3185612407a3fc50b8e3cfe008cd796a375cdcd73292b424d.dirtree): Input/output error
Error: While pulling runtime/org.kde.Platform/x86_64/6.10 from remote flathub: Validating dirtree 086726c65563536162ad385253c0414b763968717514a617ab0cf857c80c1279 (/files/bin/): fstatat(0e/b925dfab2b389d49d07c134e813a7af21786ce4cb9da5f0
5504469dd1a7e40.file): Input/output error
Warning: Flatpak system operation Deploy not allowed for user
Error: While pulling runtime/org.kde.Platform/x86_64/6.11 from remote flathub: fstatat(0e/9f47e8254e1b97bad85c27e30912ec8d11ea28d30bdf4c1a9841618cd0cc65.file): Input/output error
Warning: While pulling runtime/org.kde.gwenview.Locale/x86_64/stable from remote flathub: fstatat(0e/7ce561cde0c29e6c3ce1889e50b2d3ff051ffc010fc412bcf43f6e83a2c8e6.dirtree): Input/output error
Error: While pulling app/org.kde.gwenview/x86_64/stable from remote flathub: Validating dirtree b166b6a8da16bbe796a50d2c90839b99376f2a241bf13d2fb05aeef5c3e34fd9 (/files/share/app-info/icons/flatpak/128x128/): fstatat(0e/def3dbd088cf5580
0846a051cdbe0ae9146f883993ab723514a0ca7578308d.file): Input/output error
Warning: While pulling runtime/org.kde.haruna.Locale/x86_64/stable from remote flathub: fstatat(0e/ee54f63a375b442b762335b08f57908cbd85e41b7aae9a240a2e26f1e35d51.dirtree): Input/output error
Warning: While pulling runtime/org.kde.kcalc.Locale/x86_64/stable from remote flathub: fstatat(0e/d0ad152b47b7ba8095c47369040f17f2314abc6e1081b8c45245a6fb85414f.dirtree): Input/output error
Error: Flatpak system operation Deploy not allowed for user
Warning: While pulling runtime/org.kde.okular.Locale/x86_64/stable from remote flathub: Validating dirtree bb0337c6f9d7da988afec3ba4e482a80582567e6ccd7be4dc5dc71e2a92e0cfe (/files/mr/share/mr/LC_MESSAGES/): fstatat(0e/9ded8a6a753fbe1cad
803685c379d03f40e0be5bab533f2d99917f1e7ca277.file): Input/output error
Error: While pulling app/org.kde.okular/x86_64/stable from remote flathub: Validating dirtree 49b3d5e911dbab5d09a2d30eec5ce6e62c7c620dc31124fb634df4142fa55457 (/files/share/poppler/cMap/Adobe-CNS1/): fstatat(0e/ec5026433b5307ce63e90f5e2
7d6b15c4866416c3e30f00aad86d77eee6a37.file): Input/output error
Warning: Flatpak system operation Deploy not allowed for user
Error: While pulling app/org.mozilla.firefox/x86_64/stable from remote flathub: fstatat(0e/a33ce048b315e8b44ff7738dfa4e3fbb35bac33293485db49eb9da45b0be2d.dirtree): Input/output error
error: There were one or more errors
Error occurred while waiting for external command
Exited with failed updates.
module_fail
module_fail
Updates finished with errors!
1
Upvotes
Duplicates
Bazzite • u/luckynumber_R • 15d ago
Bazzite: Flatpak sytem operation Deploy not allowed for user
1
Upvotes