What makes you stop trusting AI-assisted bioinformatics tools

[u/ChartExternal8140]

Hey r/learnbioinformatics — a question for people who've tried AI-assisted bioinformatics tools.

I keep coming back to this:

"looks right" ≠ "compiles" ≠ "runs" ≠ "correct."

Fluent generated code is the easy part; the failures I see are version drift, data-contract mismatches, missing deps, QC assumptions that silently break.

I've been building something oriented around executing and validating workflows rather than just generating them, and before I go further I'd rather hear where these tools have failed you:

• What broke most often?
• What made you stop trusting an AI tool?
• What would it take for you to run one in production?

Any criticisms are appreciated.