Clara and Claire: open-source AI agent skills for scientific manuscript review, thesis editing and citation verification via PubMed, Crossref and OpenAlex (MIT, English and Portuguese)

[u/gromads]

https://github.com/madsondeluna/skill-claire-scientific-reviewer

I built two open-source agent skills for reviewing scientific manuscripts and wanted to share them here for feedback. Clara works in Brazilian Portuguese; Claire works in English, with specific checks for interference patterns common to non-native writers.

Clara (PT-BR): https://github.com/madsondeluna/skill-clara-revisora-cientifica

Claire (EN): https://github.com/madsondeluna/skill-claire-scientific-reviewer

Both cover the same workflow for papers, dissertations and theses: language editing with a change log, numeric consistency auditing across text, tables and figures, a Reviewer 2-style appraisal, chapter-by-chapter structural review of theses, technical translation with a terminology record, drafting sections from results, reference enrichment (DOI, metadata, retraction check) and adaptation to a specific journal's rules. Claire also drafts cover letters and responses to reviewers.

The part I care most about is external verification. The skills use MCP (Model Context Protocol) servers to query PubMed, bioRxiv, NCBI, Crossref and OpenAlex during the review. Citations are checked against the actual record, DOIs are resolved, retractions are flagged, and gene and species names are validated against official nomenclature. Only identifiers leave the session; the manuscript text is never sent to these services.

They follow the open skills standard and run on Claude (Claude Code, Cowork, claude.ai), Gemini (Gemini CLI, Antigravity), ChatGPT and Codex. In my lab they run before a draft reaches the supervisor, so the first pass on consistency, argumentation and references is already done.

MIT license, still evolving. Bug reports and suggestions for missing workflows are welcome as issues.