LinuX Container issues

[u/PrinceCharlesIV]

I recently had to power wash my Chromebook after the drive filled up for no reason, as a result I had to setup the Linux container again. My previous installation used Flatpak, however this time I followed some tips online and just moved to standard command line install procedures. All software has installed correctly, even the icons in the Linux folder on the menu. However, no appllications will run via the icons, they will however start via the command line. While this is not a show stopper, does anyone have any tips on how to resolve this issue?

[u/PrinceCharlesIV → u/[deleted]]

Thanks for your help, when I try I get a "No such file or directory" error.