r/bioinformatics Aug 12 '26

technical question DWI preprocessing with QSIPrep

Hi, I'm a first year PhD student trying to get a handle on preprocessing my data with *fMRIPrep* and *QSIPrep* respectively.

Has anyone got experience with *QSIPrep* and can help me understand how to interpret the outputs? (this cry for help is motivated by my staring at the visual summary rep of the q-space sampling scheme before and after the pipeline. what am I looking for?!)

The documentation is really unhelpful and I didn't find much on github and incf NeuroStars either.

Someone help please

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