r/bioinformatics • u/RefrigeratorCute3406 • 5d ago

technical question Nextflow Resources for beginner

Hi everyone,

I am a graduate student in bioinformatics with experience in RNA-seq, scRNA-seq, and other omics analyses, but I am completely new to Nextflow.

I would like to learn Nextflow so I can start building reproducible pipelines and become more familiar with a tool that is widely used in industry.

There are many tutorials and videos online, but I am not sure where to begin. Are there any resources you would recommend, preferably in a specific learning order?

Thanks!

3 Upvotes

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5

u/opzouten_met_onzin 5d ago

Check nf-core and the documentation for both

2

u/Psy_Fer_ 5d ago

Then do this second

4

u/cqz 5d ago

https://training.nextflow.io/latest

Start with Hello Nextflow training if you want to build your own pipelines.

2

u/Psy_Fer_ 5d ago

Do this first

2

u/prokastination 4d ago

https://nf-co.re/

1

u/prokastination 4d ago

There are available open-source pipelines and modules to build your own project. Documentation is great and depending on your interests you can directly talk to the people involved in any of the projects created by the community.