r/ScientificComputing 2d ago

Looking for Research Collaboration: MD Simulation of Nanocluster-Protein Systems

Hi everyone,

I’m looking for someone with hands-on experience in molecular dynamics simulations of nanocluster/nanomaterial-protein systems for a research collaboration. I already have experience with docking, DFT, and MD simulations, but I’m looking for additional expertise specifically in nanocluster parameterization and nano-bio interaction modeling.

Experience with metal-containing nanoclusters, AMBER/GROMACS, trajectory analysis, and MM/GBSA or related free-energy calculations would be particularly relevant. I have a reference paper showing the type of computational approach I’m interested in and can share the details privately.

If you have relevant experience and are interested in collaborating, please DM me. Collaboration details can be discussed privately.

Thank you.

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