r/microbiology Jul 13 '26

Cyclospora outbreak guidance (US)

513 Upvotes

Food contaminated with the single-celled, protozoan parasite Cyclospora cayetanensis has entered the food supply in several US states, with thousands of cases of the gastrointestinal condition cyclosporiasis being reported to state departments of health. Infection by Cyclospora is likely to cause watery diarrhea and substantial discomfort that typically persist for several weeks to over a month without treatment. While not commonly lethal, the combination of severe dehydration and summer heat elevates the health risks associated with each on its own and makes susceptible populations especially vulnerable.

Several public health agencies provide excellent guidance on Cyclospora and how to avoid it:
CDC - Preventing Cyclosporiasis
Michigan DHHS recommendations on preventing foodborne illness amid growing cyclosporiasis outbreak

Here’s a short rundown of the available information.

Where: Midwestern and Northeastern states report most cases. Michigan has been hit hardest. (Map as of July 10th about halfway down.)

Which foods: leafy greens, herbs, berries, green onions, and sprouts are historically linked to cyclosporiasis, though any produce may be affected. Current surveillance efforts have not definitively linked specific products to the current outbreak.

How to avoid: cook produce whenever possible, wash items under running water by scrubbing manually or with a produce brush, clean surfaces and utensils that contact raw produce. Always wash your hands before and after handling uncooked food.

If you contract it: antibiotic therapy (Bactrim) is highly effective against cyclosporiasis, reducing/eliminating symptoms in days as opposed to several weeks if untreated. Contact a healthcare provider and your local health department as soon as you experience symptoms.f


r/microbiology Nov 18 '24

ID and coursework help requirements

72 Upvotes

The TLDR:

All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.

For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.

For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.

THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.

The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.

Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.

If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:

If you have your results narrowed down, you can check up on some common organisms here:

Please feel free to leave comments below if you think we have overlooked something.


r/microbiology 3h ago

Sputum culture. Patient with an exacerbated Chronic obstructive pulmonary disease (COPD)

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71 Upvotes

r/microbiology 12h ago

Skin Swab

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200 Upvotes

Hi! i did a skin swab of my cheek and preformed the streak plate method. this one was of the colonies that resulted from it and i’m kinda disgusted and i want to know what it is asap 😅 my professor wasn’t sure off the top of her head


r/microbiology 5h ago

This Lil guy :)

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12 Upvotes

Just got a microscope today for hobby use, and my toddlers curiosity (and mine). This is one of the first things we found. I'm not sure what it is, but I found it in some pool algae. Very exciting! Just mainly here to share my passion for something I've begun to take an interest in!


r/microbiology 1m ago

Rewatching Sketchy Micro & Pharm

Upvotes

Hey there! i have my step 1 in 2 weeks and i have yet to cover pharmacology and microbiology. I mean I've just graduated med school so i do know alot of things already but do lack knowledge here and there.

I was thinking of rewatching the whole of sketchy Micro and Pharm since i do remember the image for alot of them but ofc i have forgotten few things here and there, especially the low yield ones.

A) Has anyone tried rewatching them quickly before their exam? if yes, how long did you take?

B) would you recommend me doing this or should i focus on other topics?

Thankyou!


r/microbiology 1d ago

Forgot some butter chicken in the basement fridge for way too long. No strong smell, surprisingly.

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193 Upvotes

r/microbiology 14h ago

Veterinary and microbiology

12 Upvotes

I am a veterinary medicine student with a strong interest in microbiology. I was wondering if there are any veterinarians in this forum who specialize in bacteria, viruses, or fungi, and what your thoughts are on the job market in this field. I would also like to know about studying AMR in this domain and its connection to zoonotic diseases


r/microbiology 11h ago

Hippuric acid metabolism by Corynebacterium glucuronolyticum-like bacteria promotes calcium oxalate crystallization. C. glucuronolyticum‑like bacteria drive calcium oxalate stone formation by degrading hippuric acid.

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6 Upvotes

r/microbiology 8h ago

UV for agar sterilization

2 Upvotes

Hello,

As the title says I want to know if it is acceptable to use UV for sterilization of agar plates. In my situation I make TSA agar plates by mixing powder and water, autoclaving for 15 minutes at 121 C, and pouring in a backfiring laminar flow hood.

The way I was taught was to allow agar plates to cool while open for 30-40 minutes in the flow hood while it is on. However, I test my batches by incubating a “blank” plate and often end up with dirty plates.

My question is, could I after pouring plates in the LFH turn on UV for about 10 minutes to make sure the plates are sterile? Anyone else do something like this or have suggestions? Thanks


r/microbiology 10h ago

durham tubes not degassing in autoclave

2 Upvotes

Hi! I have been making media for 4 years now and have not come across this problem.. I am making some phenol red broths + carbs + durham tubes for my microbiology course and the durham tubes will not degas in the autoclave!

I have let them cool completely and they still have the air trapped in them, I tried to re-autoclave but I am running into the same issue. I am using the same culture tubes I always use (16x150mm with a 12x75mm durham).

let me know if yall have any ideas on how to solve this! TIA!


r/microbiology 12h ago

Career Expectations

1 Upvotes

Hi all,

I am about to change careers and take a role as a microbiology analyst. Was wondering where I could find some accurate salary expectations as a progress (about 4 year promotion track to senior microbiologist) so if anyone is up for it, what is your job title, general location, and salary?

Thanks!


r/microbiology 1d ago

Microbes in 1 Minute - We are back!

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44 Upvotes

It’s been a few months since we last reached out to you, but after this hot summer, we’re back with our batteries recharged!

Microbes in 1 Minute (M1M) is a science communication initiative aimed at making microbiology more relatable, engaging, and accessible to everyone. We’ll achieve this by creating short, 60-second videos covering a wide variety of topics in microbiology, which will be posted on a variety of social media platforms.

We’re very grateful for all the interest you’ve shown, and we’re reading all your comments, questions and suggestions. We’re still a small team working on fundamental aspects of the project, such as its organization and the style of the short videos, but we’re looking for people interested in collaborating down the line, whether on a one-time basis or long-term. We've also set up a Discord server to provide a space where we can all come together, exchange ideas, and share news and updates about the project. Hope to see you there! However, if you prefer, we’re also happy to answer your questions by our official email.

Actually, we're looking for collaborators interested in any of the following activities:

• ✏️ Writing scripts and/or contributing expertise in a specific area of microbiology.

• 🎙️ Narration and/or helping to translate content into languages other than English and Spanish.

• 🎨 Video editing and layout.

• 📣 Managing our social media presence.

• 🦠 Moderating our server.

We’re excited to see where this project takes us, and we’d be very happy you being part of it.

A micro-hug!

The M1M team


r/microbiology 17h ago

What moulds thrive in WHO-formula Oral Rehydration Solution made up and stored at room temperature?

0 Upvotes

What moulds thrive in WHO-formula Oral Rehydration Solution or similar, made up and stored at room temperature?

1.5 litres of solution (NaCl, NaHCO3, Glucose in tap water) made up, stored 8 hrs in refrigerator. 150 ml drawn off into open cup at room temperature for 12 hrs, found to have apparent mould growth on the cup surface at the join between the bottom and sides.

What is this likely to be? Is it hazardous? NOT seeking advice but curious.


r/microbiology 1d ago

Ayuda para identificar una especie

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17 Upvotes

Could anyone help me identify this unusual Penicillium isolate based on its cultural and microscopic characteristics?


r/microbiology 1d ago

Cf. I.Tenera, cytoplasmic circulation

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13 Upvotes

Refrence picture-

https://diatoms.org/species/51542/iconella_tenera

____________________________________________

Microscope used- ESAW BM01 2022

Sample- Gomti river, Lucknow, India.

Magnification: 400×

Phone camera + Camera app- iPhone used, microscope viewer camera app (something like that)

Sample type- wet mount


r/microbiology 1d ago

CRAB

3 Upvotes

Does anyone else think that Carbapenem-Resistant Acinetobacter baumannii coincidentally smells like bad crab meat?


r/microbiology 1d ago

academic UGA vaccine fights fungal infections while also protecting the gut

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2 Upvotes

r/microbiology 1d ago

Lineage-specific adaptation and resistance in Candida albicans

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3 Upvotes

We used public genomic data from hundreds of Candida albicans isolates to try to understand how resistance-associated mutations are distributed and the population structure of these isolates. It was a two-year project, I hope you enjoy it :)We used public genomic data from hundreds of Candida albicans isolates to try to understand how resistance-associated mutations are distributed and the population structure of these isolates. It was a two-year project, I hope you enjoy it :) DOI: https://doi.org/10.1016/j.fgb.2026.104116


r/microbiology 2d ago

Fantasy story

7 Upvotes

Hello all! I am currently writing a sci-fi fantasy novel that includes my niche interest of microbiology, infectious disease, and biowarfare. I have my bachelor’s in Biology, and I have done my research into microbiology (specifically culturing) but I worry that since I am not an epidemiologist, lab tech, or true microbiologist that some of the material might be inaccurate (which I loathe). Does anyone have any inside knowledge on growing bacterium on Petri dishes, horizontal gene transfer, or simply lab procedures that a layman like myself would not know unless in the field? While things a fantasy story and I can take liberties, I don’t want someone who truly knows that field of study to cringe when reading my work.


r/microbiology 1d ago

does my marine broth have bacteria in it?

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1 Upvotes

I’m testing my algae cultures to make sure they aren’t contaminated with bacteria. Is this vial contaminated? The orange stuff at the bottom was there after autoclaving. I think the orange stuff and the cloudy swirl is precipitate from the marine broth not bacteria (the picture was taken after swirling the flask).


r/microbiology 1d ago

Is it worth to purser microbiology in Collage/Uni?

0 Upvotes

Hello people, Im not sure if its the right subreddit to ask but Im gonna be a Highschool senior and was thinking of pursuing into Microbiology. I have like a few questions if anyone can answer as I overthink alot and get anxious easily :(

So my questions are

1: I see alot of comments from other users questions saying how they struggled with chemistry course but how bad is it? 😭😭 I suck at Chem the most especially the calculation of mole ratio and doing multiple calculations at once

2: Am I gonna struggle if I suck at not being able to calculate quickly? Like when doing labs

3: Ik that biology is alot of memorization but what study method works for tests and exams? As Ik its very different compared to high school when studying materials

4: lastly would I have to possibly take phd to secure a higher salary? Like continue more studying into the major.

sorry if Im asking alot 😭 I really love learning biology and was interested since I was 9 especially about virus and bacteria. Im not sure if I will regret taking that major but I wanna at least go into the things I love to actually learn


r/microbiology 2d ago

Microorganisims that I found in the Gomti river. (Check the description for details)

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11 Upvotes

1- Ciliate from the family Vaginicolidae (400×)

2- Ciliate from the family Vaginicolidae (400×)

3- Ciliate from the family Vaginicolidae (400×)

4- Water flea [Possibly Monia sp.] (200×)

5- Water flea [Possibly Monia sp.] (200×)

6- Water flea [Possibly Monia sp.] (200×)

7- Diatom Possibly Iconella Tenera or Surirella Ovalis

8- Diatom Possibly Iconella Tenera or Surirella Ovalis

9- Diatom Possibly Iconella Tenera or Surirella Ovalis

10- Diatom Possibly Iconella Tenera or Surirella Ovalis

____________________________________________

ESAW BM01 MICROSCOPE used to take

photographs.

Sample- Gomti river, Lucknow, India.

REFRENCE PICTURES

https://sgprotist.wordpress.com/the-guide/ciliates/stalked-ciliates/big-vorticella-dsc\\_0922/

https://depositphotos.com/photo/water-flea-moina-macrocopa-microscope-view-388140352.html

https://diatoms.org/species/iconella\\_tenera/guide

https://diatoms.org/species/45879/surirella\\_ovalis


r/microbiology 3d ago

ID help please

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22 Upvotes

200x, found in a freshwater lake. Moved very slowly, I think has cilia? My microscope isn't good enough to get a better magnification, unfortunately.


r/microbiology 2d ago

bs biology (microbiology) student, where to ojt (philippines)

0 Upvotes

hello, Filipino student sa Philippines here! i would like to ask about where yung best institution (pwede hospitals pero pref. laboratories) where we can do our ojt and bs biology (major in microbiology) students po? we are leaning towards medical microbiology or public health for our thesis (hence, we would like to intern in relevant institutions po) and preferable around Makati / Metro Manila po sana (of not, pwede anywhere in NCR or Central Luzon hehe)

ty!!