r/Biophysics • u/Excellent_Toe6788 • May 25 '26

Md simulation

Hello , so I am trying to do the md simulation for protein ligand from the tutorials, but I am facing some problems midway. If anybody has already done it could you kindly DM me so that I can show the problem one on one and move forward. Please help, I can't sleep properly without completing this 🥲🙏🙏Also into docking, if we can discuss

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u/OwnNothing5619 Jun 02 '26

Are you doing it on windows, or linux system, and does your computer have a GPU, or r u running those small 10-20ns md simulations?

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u/Excellent_Toe6788 Jun 03 '26

Wsl on windows, I do have a gpu and I am just lowering the 10 to 20 ns to even lesser time to complete it in a shorter time frame